PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria

This study assessed the relative contributions of host genetics and diet in shaping the gut microbiota of rainbow trout. Full sibling fish from four unrelated families, each consisting of individuals derived from the mating of one male and one female belonging to a breeding program, were fed diets containing either vegetable proteins or vegetable oils for two months in comparison to a control diet consisting of only fish protein and fish oil. Two parallel approaches were applied on the same samples: transcriptionally active bacterial populations were examined based on RNA analysis and were compared with bacterial populations obtained from DNA analysis. Comparison of temporal temperature gradient gel electrophoresis (TTGE) profiles from DNA and RNA showed important differences, indicating that active bacterial populations were better described by RNA analysis. Results showed that some bacterial groups were significantly (P<0.05) associated with specific families, indicating that microbiota composition may be influenced by the host. In addition, the effect of diet on microbiota composition was dependent on the trout family

Trophic ecology of the chiton Acanthopleura echinata on Chilean rocky shores Ecología trófica del chitón Acanthopleura echinata en costas rocosas de Chile

Polyplacophorans are common herbivores on rocky shores, but basic aspects of their ecology remain scarcely studied and their role within communities could be more complex than previously considered. Such is the case of Acanthopleura echinata (Barnes), one of the largest and most conspicuous chitons in the world, and at the same time, one of the least known intertidal species in the southeastern Pacific. To improve the basic ecological knowledge of this potentially important intertidal consumer, we studied the diet of A. echinata and its variation among sites of varying levels of coastal upwelling spread over 1000 km along the coast of northern Chile. A seasonal evaluation of diet, body size distribution and density at sites expected to vary in overall nutrient loadings, benthic algal productivity and sea surface temperature, allowed us to examine plasticity in Acantholeura diet and body size. Overall, A. echinata consumed 85 items of algae (64.7 %, mainly fleshy and calcified encrusting thalli) and invertebrates (35.3 %, mainly barnacles). Diet was always dominated by encrusting corallines, although the proportion of algae increased with body size suggesting an ontogenetic variation in feeding habits. Although the number and occurrence frequency of dietary items varied significantly in time and space, there were no consistent seasonal patterns and the dominant items in the diet remained the same at all places. The density of A. echinata showed no significant spatial variation, but its body size and diet breadth correlated positively among sites and both tended to increase with latitude. Our results show that A. echinata is a generalist, polyphagous consumer with a high potential for affecting the space-occupancy dynamics in the intertidal system, and also that among site variation in diet bears no simple relationship with variation in sea surface temperature and upwelling intensity.<br>Los poliplacóforos son herbívoros comunes en costas rocosas, pero los aspectos básicos de su ecología han sido escasamente estudiados y su rol trófico dentro de las comunidades podría ser más complejo de lo considerado hasta ahora. Tal es el caso de Acanthopleura echinata (Barnes), uno de los chitones más grandes y conspicuos en el mundo, pero a la vez una de las especies intermareales menos conocidas del Pacífico sudeste. A fin de mejorar el conocimiento ecológico básico de este consumidor intermareal potencialmente importante, estudiamos la dieta de A. echinata y su variación entre sitios con distintos niveles de surgencia costera distribuidos a través de 1000 km en la costa del norte de Chile. Una evaluación estacional de la dieta, distribución de tamaño corporal y densidad en sitios con diferencias esperables en aporte total de nutrientes, productividad de algas bentónicas y temperatura superficial del mar, permitió examinar la plasticidad de la dieta y el tamaño corporal de Acanthopleura. Globalmente, A. echinata consumió 85 ítemes de algas (64.7 %, principalmente algas incrustantes calcificadas y blandas) e invertebrados (35.3 %, principalmente cirripedios). Su dieta estuvo siempre dominada por coralinas incrustantes, aunque la proporción de algas aumentó con el tamaño corporal sugiriendo una variación ontogenética en sus hábitos tróficos. Aunque el número y frecuencia de ocurrencia de ítemes dietarios variaron significativamente en tiempo y espacio, no hubo patrones estacionales consistentes y los ítemes dominantes en la dieta fueron los mismos en todos los lugares. La densidad de A. echinata no varió significativamente a través del espacio, pero su tamaño corporal y su amplitud dietaria se correlacionaron positivamente entre sitios y ambos tendieron a aumentar con la latitud. Nuestros resultados muestran que A. echinata es un consumidor generalista y polífago con alto potencial para afectar la dinámica de ocupación del espacio en el sistema intermareal, y además que la variación dietaria entre sitios no tiene una relación evidente con la variación en intensidad de surgencia y temperatura superficial del mar

Caracterización trófica del placóforo intermareal Enoplochiton niger en el norte de Chile: variación ambiental y patrones dietarios a nivel local y region Trophic characterization of the intertidal placophoran Enoplochiton niger in northern Chile: environmental variation and dietary patterns at local and regional levels

El rol e impacto de los herbívoros en la trama trófica de comunidades intermareales rocosas podría ser más diverso y complejo de lo considerado hasta ahora, particularmente en el caso de consumidores de mayor tamaño y abundancia como el molusco placóforo Enoplochiton niger. Esta especie es uno de los pastoreadores de mayor tamaño (hasta 20 cm) e importancia ecológica en las costas rocosas del norte de Chile, pero también una de las especies menos conocidas en términos tróficos. Este trabajo presenta una evaluación de los patrones dietarios de E. niger en cuatro comunidades del norte de Chile, distribuidas en 1.000 km de costa y muestreadas estacionalmente entre invierno 2004 y otoño 2006. Además se analizó la relación de su dieta con factores biológicos y físicos, incluyendo el efecto potencial del evento El Niño 2004-2005 ocurrido durante el período de estudio. A nivel regional, el espectro dietario de E. niger abarcó un total de 98 recursos (60 ítemes algales y 38 ítemes invertebrados), y los ítemes más importantes fueron organismos sésiles con formas de crecimiento incrustante o en capa. E. niger mostró una gran amplitud de nicho tanto a nivel regional como local (rango: 20,7-28,0; índice de Levins), con una riqueza dietaria a nivel individual independiente del tamaño corporal. Tanto el número de ítemes dietarios consumidos por individuo como la composición taxonómica de la dieta no mostraron diferencias significativas entre comunidades, pero variaron significativamente entre el período asociado al evento El Niño y el período posterior. No hubo ninguna relación clara entre los patrones dietarios de E. niger y los niveles contrastantes de intensidad de surgencia entre las comunidades estudiadas. Los resultados muestran que E. niger es un consumidor generalista y polífago, y un potencial omnívoro, el cual podría tener un alto impacto sobre los patrones de ocupación de espacio en la comunidad intermareal.<br>The role and impact of herbivores on rocky intertidal food webs could be more complex and diverse than previously considered, particularly in the case of larger and more abundant consumers such as the placophoran mollusc Enoplochiton niger. This species is one of the largest (up to 20 cm) and ecologically most important grazers on rocky shores of northern Chile, but also one of the lesser known species in trophic terms. This work presents an assessment of the dietary patterns of E. niger in four communities of northern Chile, distributed along 1,000 km of coastline and sampled seasonally from winter 2004 to autumn 2006. The analysis included the relationship of its diet with physical and biological factors, and particularly the potential effect of the 2004-2005 El Niño event that occurred during the study period. At a regional level, the dietary spectrum of E. niger comprised a total of 98 food resources (60 algal Ítems and 38 invertebrate Ítems), and the most important Ítems were sessile organisms of encrusting and layer-forming growth habits. E. niger exhibited a very high niche breadth at both local and regional levels (ranging from 20.7 to 28.0; Levins' index), and its dietary richness at the individual level was independent from its body size. Both the number of dietary ítems consumed per individual and the taxonomic composition of the diet did not show statistical differences among communities, but they were significantly different between the El Niño and non-El Niño periods. There was no clear relationship between the dietary patterns of E. niger and the contrasting levels of upwelling intensity among the communities studied. The results show that E. niger is a generalist polyphagous consumer, and a potential omnivore, which could have a high level of impact on space occupancy patterns in the intertidal community

Effect of Enzymatic Hydrolysis on Solubility and Emulsifying Properties of Lupin Proteins (<i>Lupinus luteus</i>)

Solubility and emulsifying properties are important functional properties associated with proteins. However, many plant proteins have lower techno-functional properties, which limit their functional performance in many formulations. Therefore, the objective of this study was to investigate the effect of protein hydrolysis by commercial enzymes to improve their solubility and emulsifying properties. Lupin protein isolate (LPI) was hydrolyzed by 7 commercial proteases using different E/S ratios and hydrolysis times while the solubility and emulsifying properties were evaluated. The results showed that neutral and alkaline proteases are most efficient in hydrolyzing lupin proteins than acidic proteases. Among the proteases, Protamex® (alkaline protease) showed the highest DH values after 5 h of protein hydrolysis. Meanwhile, protein solubility of LPI hydrolysates was significantly higher (p 0.05) than untreated LPI at all pH analyzed values. Moreover, the emulsifying capacity (EC) of undigested LPI was lower than most of the hydrolysates, except for acidic proteases, while emulsifying stability (ES) was significantly higher (p Lupinus luteus) proteins can be improved by enzymatic hydrolysis using commercial enzymes

Debaryomyces hansenii and Rhodotorula mucilaginosa comprised the yeast core gut microbiota of wild and reared carnivorous salmonids, croaker and yellowtail

This is the first study using molecular and culture-based methods aimed at investigating the composition of the intestinal yeast microbiota of wild and reared carnivorous salmonids, croaker and yellowtail, to characterize their cores and to evaluate the enzymatic activities of the cultivated yeast. Among 103 samples from salmonids, croaker and yellowtail, yeast were detected in 85.4%, with 43 species identified. The core of reared fish was composed of eight species, in contrast to the wild fish core, which consisted of two species: Debaryomyces hansenii and Rhodotorula mucilaginosa. Despite the smaller diversity of the wild fish core, similar enzymatic profiles were detected for the species from the wild and reared cores. For principal component analysis, samples grouped together independently of host species, domestication status and location. A high proportion of yeast produced aminopeptidases and lipases, which may be explained by the high proportion of protein and lipids in the carnivorous diet. This study reveals the presence of a yeast community in the fish gut that appears to be strongly shaped by a carnivorous diet. Yeast in the gut increases the repertoire of microorganisms interacting with the host intestine, which could influence health and disease